Preprints
- Model-based Trajectory Inference for Single-cell RNA Sequencing Using Deep Learning with a Mixture Prior
Jinhong Du, Ming Gao, Jingshu Wang, 2020.
BioRxiv | VITAE - Causal Inference for Heritable Phenotypic Risk Factors Using Heterogeneous Genetic Instruments
Wang, Jingshu, Qingyuan Zhao, Jack Bowden, Gilbran Hemani, George Davey Smith, Dylan Small, and Nancy R. Zhang, 2020.
BioRxiv | GRAPPLE - Detecting Replicating Signals using Adaptive Filtering Procedures
Jingshu Wang, Lin Gui, Weijie Su, Chiara Sabatti, and Art B. Owen, 2020.
Arxiv | AdaFilter
Publications
- Data Denoising and Post-Denoising Corrections in Single Cell RNA Sequencing.
Agarwal, Divyansh, Jingshu Wang, and Nancy R. Zhang, 2020. Statistical Science 35(1): 112-128.
Paper - Surface protein imputation from single cell transcriptomes by deep neural networks
Zhou, Zilu, Chengzhong Ye, Jingshu Wang, and Nancy R. Zhang, 2020. Nature communications 11(1): 1-10.
Paper | BioRxiv | cTPnet - Data denoising with transfer learning in single-cell transcriptomics
Jingshu Wang, Divyansh Agarwal, Mo Huang, Gang Hu, Zilu Zhou, and Nancy R. Zhang, 2019. Nature Methods 16, 875-878 .
Paper | BioRxiv | Website | SAVER-X - Powerful genome-wide design and robust statistical inference in two-sample summary-data Mendelian randomization
Qingyuan Zhao, Yang Chen, Jingshu Wang, and Dylan S. Small, 2019. International Journal of Epidemiology, 48(5),1478-1492
Paper | Arxiv - Statistical inference in two-sample summary-data Mendelian randomization using robust adjusted profile score
Qingyuan Zhao, Jingshu Wang, Gilbran Hemani, Jack Bowden, and Dylan S. Small. Annals of Statistics, to appear.
Arxiv | MR-RAPS - Two-sample instrumental variable analyses using heterogeneous samples
Qingyuan Zhao, Jingshu Wang, Jack Bowden, and Dylan S. Small, 2019. Statistical Science, 34(2), 317-333.
Paper | Arxiv - Gene expression distribution deconvolution in single cell RNA sequencing
Jingshu Wang, Mo Huang, Eduardo Torre, Hannah Dueck, Sydney Shaffer, John Murray, Arjun Raj, Mingyao Li, and Nancy R. Zhang, 2018. Proceedings of National Academy of Sciences 115(28), E6437-E6446
Paper | Paper code | BioRxiv | DESCEND - SAVER: gene expression recovery for single cell RNA sequencing
Mo Huang, Jingshu Wang, Eduardo Torre, Hannah Dueck, Sydney Shaffer, Roberto Bonasio, John Murray, Arjun Raj, Mingyao Li, and Nancy R. Zhang, 2018. Nature Methods 15, 539-542
Paper | BioRxiv | SAVER - Admissibility in partial conjunction testing
Jingshu Wang and Art B. Owen, 2019. Journal of the American Statistical Association 114, 158-168
Paper | Arxiv - Confounder adjustment in multiple hypotheses testing
Jingshu Wang, Qingyuan Zhao, Trevor Hastie, and Art B. Owen, 2017. Annals of Statistics 45, 1863-1894
Paper | Arxiv | Cate - Bi-cross-validation for factor analysis
Art B. Owen and Jingshu Wang, 2016. Statistical Science 31, 119-139
Paper | Arxiv | esaBcv